TCGAprimaryTumors: Select primary tumors from TCGA datasets

In waldronlab/TCGAutils: TCGA utility functions for data management

Select primary tumors from TCGA datasets

Description

Tumor selection is decided using the sampleTypes data. For 'LAML' datasets, the primary tumor code used is "03" otherwise, "01" is used.

Usage

TCGAprimaryTumors(multiassayexperiment)

Arguments

multiassayexperiment

A MultiAssayExperiment with TCGA data as obtained from curatedTCGAData::curatedTCGAData()

Value

A MultiAssayExperiment containing only primary tumor samples

Examples

example(getSubtypeMap)

TCGAprimaryTumors(gbm)

waldronlab/TCGAutils documentation built on April 26, 2024, 12:23 p.m.