Files in waldronlab/TCGAutils

TCGA utility functions for data management

NEWS.md R/ID-translation.R R/TCGAbarcode.R R/TCGAbiospec.R R/TCGAprimaryTumors.R R/TCGAsampleSelect.R R/TCGAutils-pkg.R R/builds.R R/curatedTCGAData-helpers.R R/data.R R/findGRangesCols.R R/generateMap.R R/getFileName.R R/imputeAssay.R R/makeGRangesListFromCopyNumber.R R/makeGRangesListFromExonFiles.R R/oncoPrintTCGA.R R/simplifyColData.R R/simplifyTCGA.R R/utils.R README.md inst/extdata/blca_cnaseq.R inst/extdata/bt.exon_quant.R inst/scripts/clinicalNames.R inst/scripts/diseaseCodes.R inst/scripts/sampleTypes.R man/ID-translation.Rd man/TCGAbarcode.Rd man/TCGAbiospec.Rd man/TCGAprimaryTumors.Rd man/TCGAsampleSelect.Rd man/TCGAutils-package.Rd man/builds.Rd man/clinicalNames.Rd man/curatedTCGAData-helpers.Rd man/diseaseCodes.Rd man/findGRangesCols.Rd man/generateMap.Rd man/getFileName.Rd man/hidden-helpers.Rd man/imputeAssay.Rd man/makeGRangesListFromCopyNumber.Rd man/makeGRangesListFromExonFiles.Rd man/mergeColData.Rd man/oncoPrintTCGA.Rd man/sampleTypes.Rd man/simplifyTCGA.Rd man/trimColData.Rd tests/testthat.R tests/testthat/test-ID-translation.R tests/testthat/test-builds.R tests/testthat/test-identifiers.R vignettes/TCGAutils.Rmd