frequencySigs: Identify the most frequently recurring taxa in bugsigdb
In waldronlab/bugSigSimple: Simple exploratory analysis of curated microbe signatures
frequencySigs R Documentation
Identify the most frequently recurring taxa in bugsigdb
Description
Identify the most frequently recurring taxa in bugsigdb
Usage
frequencySigs(sigs, n = 10)
Arguments
sigs
data.frame produced by importBugSigDB
n
Number of top taxa to return
Value
integer vector of top most recurrent taxa
Examples
dat <- bugsigdbr::importBugSigDB()
dat.select <- bugsigdbr::getSignatures(dat, tax.level = "genus", exact.tax.level=TRUE)
dat.select <- dat.select[grep("UP", names(dat.select))] #only "UP" signatures
frequencySigs(sigs=dat.select, n = 10)
waldronlab/bugSigSimple documentation built on Feb. 1, 2024, 12:22 a.m.
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| frequencySigs | R Documentation |
Identify the most frequently recurring taxa in bugsigdb
Description
Identify the most frequently recurring taxa in bugsigdb
Usage
frequencySigs(sigs, n = 10)
Arguments
sigs |
data.frame produced by importBugSigDB |
n |
Number of top taxa to return |
Value
integer vector of top most recurrent taxa
Examples
dat <- bugsigdbr::importBugSigDB()
dat.select <- bugsigdbr::getSignatures(dat, tax.level = "genus", exact.tax.level=TRUE)
dat.select <- dat.select[grep("UP", names(dat.select))] #only "UP" signatures
frequencySigs(sigs=dat.select, n = 10)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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