Man pages for waldronlab/bugsigdbr
R-side access to published microbial signatures from BugSigDB
| browseSignature | Displaying BugSigDB signatures pages in a web browser |
| browseTaxon | Displaying BugSigDB taxon pages in a web browser |
| extractTaxLevel | Extract specific taxonomic levels from a microbe signature |
| getMetaSignatures | Obtain meta-signatures for a column of interest |
| getOntology | Obtain the EFO and UBERON ontology |
| getSignatures | Obtain microbe signatures from BugSigDB |
| importBugSigDB | Obtain published microbial signatures from bugsigdb.org |
| restrictTaxLevel | Restrict microbe signatures to specific taxonomic levels |
| subsetByOntology | Ontology-based subsetting of BugSigDB signatures |
| writeGMT | Write microbe signatures to file in GMT format |
