get_metadata: Get relevant metadata for each SRR using SRP
In waldronlab/curatedMetagenomicDataCuration: Curated Metagenomic Data of the Human Microbiome
get_metadata R Documentation
Get relevant metadata for each SRR using SRP
Description
Get relevant metadata for each SRR using SRP
Usage
get_metadata(srp)
Arguments
srp
An SRP as a string beginning with the prefix "SRP"
Details
Supports studies with up to 99,990 runs. See Examples for the template used for curatedMetagenomicData.
The data.frame has five columns:
1. "sampleID" Sample ID.
2. "sequencing_platform": Sequencing platform used.
3. "number_reads": Number of reads. If there are multiple SRRs, the sum of number_reads is used.
4. "avg_read_length": Average read length If there are multiple SRRs, the mean avg_read_length is used.
5. "SRRs": A list of SRRs associated with the sample ID.
Value
a data.frame with sampleID, sequencing_platform, number_reads, and avg_read_length
waldronlab/curatedMetagenomicDataCuration documentation built on June 9, 2025, 3:56 p.m.
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| get_metadata | R Documentation |
Get relevant metadata for each SRR using SRP
Description
Get relevant metadata for each SRR using SRP
Usage
get_metadata(srp)
Arguments
srp |
An SRP as a string beginning with the prefix "SRP" |
Details
Supports studies with up to 99,990 runs. See Examples for the template used for curatedMetagenomicData. The data.frame has five columns:
1. "sampleID" Sample ID. 2. "sequencing_platform": Sequencing platform used. 3. "number_reads": Number of reads. If there are multiple SRRs, the sum of number_reads is used. 4. "avg_read_length": Average read length If there are multiple SRRs, the mean avg_read_length is used. 5. "SRRs": A list of SRRs associated with the sample ID.
Value
a data.frame with sampleID, sequencing_platform, number_reads, and avg_read_length
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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