In waldronlab/curatedMetagenomicDataCurationShiny: Tools for getting and checking sample metadata for inclusion in curatedMetagenomicData

knitr::opts_chunk$set(
  collapse = TRUE,
  comment = "#>"
)

The package can be installed and initiated from within R with the following command:

## Install package
if (!"BiocManager" %in% installed.packages()[,"Package"])
    install.packages("BiocManager")
BiocManager::install("waldronlabcuratedMetagenomicDataShinyApp/")

## Attach package
library(curatedMetagenomicDataShinyApp)

## Start application
myApp()

[Figure]

Get sample metadata for an NCBI SRA project

Step 1. Search

[Figure]

Step 2. Download

[Figure]

Check curation

waldronlab/curatedMetagenomicDataCurationShiny documentation built on Dec. 23, 2021, 4:14 p.m.