make_csv: make a csv file of metadata

In waldronlab/curatedMetagenomicDataPipeline: The Preprocessing Pipeline for curatedMetagenomicData

Description

After running save_rda, make_csv is used to create a csv file describing the rda files as specified by makeExperimentHubMetadata. Here, dir_path should be the date-specific directory (e.g. ~/uploads/2021-04-05/) that was created by save_rda. That is, users should provide a dir_path down to the date-level, but not further. When run, an ExperimentHub ready metadata csv file will be saved at the location specified.

Usage

make_csv(dir_path)

Arguments

dir_path

path to a directory where the csv file will be saved

Value

a data.frame of metadata will be returned invisibly

See Also

save_rda()

Examples

## Not run: 

make_csv("~/uploads/2021-04-05/")

## End(Not run)

waldronlab/curatedMetagenomicDataPipeline documentation built on Oct. 15, 2021, 6:38 a.m.