Files in walterxie/ComMA
Community Matrix Analysis
.Rbuildignore
.gitignore
COPYING
ComMA.Rproj
DESCRIPTION
DEVNOTE.md
NAMESPACE
R/CMStatistics.R
R/CMUtils.R
R/Classification.R
R/ComMA.R
R/CommunityComparison.R
R/CommunityPhyloStrut.R
R/Config.R
R/Distance.R
R/DiverRare.R
R/Diversities.R
R/EUtils.R
R/Enterotypes.R
R/IO.R
R/IOComMA.R
R/IOHtml.R
R/IOJava.R
R/IOLog.R
R/PhyloRareCurve.R
R/PlotPrioritisation.R
R/RedundancyAnalysis.R
R/SpatialUtils.R
R/StringUtils.R
R/SummaryReadsOTUsTaxa.R
R/TaxaUtils.R
R/TaxonomyAssignment.R
R/TaxonomyAssignment2.R
R/TreeUtils.R
R/Utils.R
R/UtilsCombine.R
R/UtilsSequences.R
R/phylorare.R
R/vif_function.R
README.md
data-raw/New_taxonomy_from_PLOSONE_2015_cleaned_up.txt
data-raw/model.test.txt
data-raw/reads.phyla.txt
data-raw/star.beast.log
data/datalist
data/taxa.ref.PLOSONE.2015.rda
man/CMStatistics.Rd
man/ComMA-package.Rd
man/CommunityComparison.Rd
man/CommunityPhyloStru.Rd
man/EUtils.Rd
man/IOComMA.Rd
man/JostDiversity.Rd
man/PlotPrioritisation.Rd
man/RDA.Rd
man/ReadsOTUsTaxa.Rd
man/TaxaUtils.Rd
man/TreeUtils.Rd
man/UtilsCombine.Rd
man/abundancePerSample.Rd
man/classification.Rd
man/convertType.Rd
man/distance.Rd
man/diverrare.Rd
man/enterotype.Rd
man/firstN.Rd
man/getMethodLines.Rd
man/getPhylorareDF.Rd
man/getPlural.Rd
man/installAllPackages.Rd
man/mkdir.Rd
man/mvRowsToLast.Rd
man/normalize.Rd
man/prettyNumbers.Rd
man/printXTable.Rd
man/readCodeCoverage.Rd
man/readFile.Rd
man/readFileLineByLine.Rd
man/readMCMCLog.Rd
man/richnessPerSample.Rd
man/shannonPerSample.Rd
man/spatial.Rd
man/splitPath.Rd
man/stringUtils.Rd
man/utilsCM.Rd
man/utilsSeq.Rd
man/writeTable.Rd
tutorials/GreengenesVsBLAST.Rmd
tutorials/GreengenesVsBLAST.html
