gg_heat_dend: Heatmap with dendrograms with ggplot2
In wanchanglin/mtExtra: More functions for metabolomics data analysis

gg_heat_dend

R Documentation

Heatmap with dendrograms with ggplot2

Description

Plot heatmap of a data matrix using ggplot2. This function is modified from https://bit.ly/2UUnY2L.

Usage

gg_heat_dend(
  mat,
  row.dend = T,
  col.dend = T,
  row.dend.right = TRUE,
  colors = c("red", "white", "blue"),
  font.size = 10,
  x.rot = 60,
  legend.title = "value",
  dist.method = "euclidean",
  clust.method = "complete",
  dend.line.size = 0.5
)

Arguments

`mat`	a data mstrix to be plotted.
`row.dend`	plot row dendrogram or not.
`col.dend`	plot column dendrogram ot not.
`row.dend.right`	a logical value to indicate the position of row dendrogram.
`colors`	a vector of colours for heatmap.
`font.size`	label font size.
`x.rot`	plot rotate degree.
`legend.title`	legend title.
`dist.method`	distance method.
`clust.method`	cluster method.
`dend.line.size`	dendrogram line size.