vst_rlt_tr: Transform count data

In wanchanglin/rnaseqdea: RNA-Seq Differential Expression Analysis (rnaseqdea)

Transform count data

Description

Transform count data. The transformed data can be used in visualisation and classification.

Usage

vst_rlt_tr(data, method = c("vst", "rlt"), ...)

Arguments

data	a data frame with gene x replicate format
method	two normalisation method vst and rst
...	further parameters to vst and rlt

Value

normalised data

Examples

## data set from R package 'pasilla' 
dn <- system.file("extdata/pasilla_gene_counts.tsv", package = "rnaseqdea")
data <- read.table(dn, header = TRUE, row.names = 1, quote = "", comment.char = "")
res <- vst_rlt_tr(data)  

wanchanglin/rnaseqdea documentation built on June 2, 2025, 1:05 a.m.