exampleData: Description of the data in the package

In wangj26/multiOmicsViz: Plot the effect of one omics data on other omics data along the chromosome

Description

chromLength is the length of 24 human chromosome. The first column is chromosome name and the second one is the length. genelocate is location of all genes in the human chromosome. The first column is gene symbol, second is the chromosome, third is the start position and fourth is the end position. sourceOmics is the copy number alteration data of human colorectal cancer, which was downloaded from firehose (http://gdac.broadinstitute.org) and contains 40 samples and genes from chromosome 20. targetOmics is the RNASeq data of human colorectal cancer, which was dowloaded from the Nature paper (Proteogenomic characterization of human colon and rectal cancer. Nature. 2014 Sep 18;513(7518):382-7. (PMID: 25043054)) and contains 3764 genes and 40 samples.

wangj26/multiOmicsViz documentation built on May 4, 2019, 12:58 a.m.