Estimate Effectivenes of Microarry Sample Size Estimation via Simulation

calc.power.est | Calculate power and proportion of observations with power... |

est.sd.ctrl | Estimate sd for a control sample matrix |

FDR | Calculate FDR for a vector of p-values |

get.cumsum | Get cumsum along columns for a matrix |

get.sd | Function to Get sd from Inverse Variance |

list.power.est | Calculate power for each set of sd in est.sd |

power.real | Summarize test result in power |

power.simu | Summarize the simulated power in a list |

sample.dep | Simulate a sample of groups of dependent normal observations |

sample.dep.2 | Simulate a sample of groups of dependent normal observations |

sample.genes.dep | Simulate Observations Given the Covariance Matrix for Normal... |

sample.genes.ind | Sample Observations (gene expressions) from Independent... |

sample.genes.ind.2 | Sample Observations (gene expressions) from Independent... |

sample.hyp.dep | Generate observations from each hypothesis (null/alternative)... |

sample.hyp.ind | Function to Sample Observations(gene expressions) from... |

sample.ind | Function to Sample Observations(gene expressions) from... |

sampling.cov.matrix | Sample a covariance matrix from a list of cov matrices |

sampling.cov.matrix.2 | Sample a list of covariance matrices that has the total... |

simu.sample | Simulate a sample with normal distribution |

simu.sample.est | Simulate a sample of control to estimate sd |

simu.sample.real | Simulate a sample to do t test |

t.decision.Bonf | Accept or reject hypotheses at specified alpha level for a... |

tdecision.multiComp | Get the test decision based on FDR procedure or Bonferroni... |

ttest.matrix | Compute running t-tests |

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