data_simu: generate simulated hic_mat and true tads

In wbaopaul/rGMAP: Call hierarchical chromatin domains from HiC matrix by GMAP

Description

generate simulated hic_mat and true tads

Usage

data_simu(stype = "poisson-dist", nratio = 2.5, mu0 = 200,
  resl = 1)

Arguments

stype	One of four types of simulated data in the manuscript: poission-dist, poission-dist-hier, nb-dist, nb-dist-hier; poission- or nb- indicates poission distribution or negative bionomial distribution -hier indicated subtads are generated nestly
nratio	The effect size between intra- and inter domain, larger means higher intra-tad contacts
mu0	The mean parameter, default 200
resl	Resolution, default set to 1

Value

A list includes following elements:

hic_mat	n by n contact matrix
hierTads	True heirarchical domains
tads_true	True TADs

wbaopaul/rGMAP documentation built on Nov. 18, 2020, 9:37 p.m.