In wckdouglas/tgirtABRF: Assign variables to TGRIT-ABRF samples

tgirtABRF provides functions for labeling files from the work, RNA-Seq of human reference RNA samples using a thermostable group II intron reverse transcriptase.

Installing:

library(devtools)
install_github('wckdouglas/tgirtABRF')

To use the library:

library(tgirtABRF)
library(dplyr)

The naming system that was used in the project is as follow: ``` {r echo=T} df <- read.csv('names.csv',header=F) colnames(df) = 'names' df

To extract the annotations from the sample names:
```r
df %>% 
    mutate(lab = getLab(names)) %>%     
    mutate(mixTemplate = getTemplate(names)) %>% 
    mutate(replicate = getReplicate(names)) %>% 
    mutate(prep = getPrep(names)) %>%
    data.frame()

wckdouglas/tgirtABRF documentation built on May 4, 2019, 2:03 a.m.