wegene-llc/radmixture
Calculate Population Stratification

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wegene-llc/radmixture: Calculate Population Stratification
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Calculate Population Stratification

brBlock Relaxation for parameters estimation
e11.11.FE11 frequency matrix
e11.allelesSNPs used in E11
emDo ancestry analysis with EM algorithm
fFixBrBlock relaxation when f is fixed
fFixEmEM when f is fixed
fFixQNquasi-Newton when f is fixed
generateGTransfer ped file to genotype matrix
globe13.13.FK13 frequency matrix
globe13.allelesSNPs used in K13
globe4.4.FK4 frequency matrix
globe4.allelesSNPs used in K4
initQFInitialize Q and F
K12b.12.FK12b frequency matrix
K12b.allelesSNPs used in K12b
K7b.7.FK7b frequency matrix
K7b.allelesSNPs used in K7b
qnquasi-Newton algorithm for ancestry analysis
radmixtureradmixture
tfrdpubTransfer personal genotype raw data according public dataset
world9.9.FWorld9 frequency matrix
world9.allelesSNPs used in World9
wegene-llc/radmixture documentation built on May 4, 2019, 2:06 a.m.

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