tfrdpub: Transfer personal genotype raw data according public dataset
In wegene-llc/radmixture: Calculate Population Stratification
Description
Usage
Arguments
Value
Description
Transfer personal genotype raw data to g matrix which the number of row is 1 and
the number of column is the number of SNPs used here.
Usage
1
tfrdpub(genotype, K, map, f)
Arguments
genotype
A data.frame contains your genotype information.
K
The number of populations
map
A data.frame, it should contain rsid, major allele and minor allele
information for both plus and minus strands.
f
Frequency matrix learned from reference panel.
Value
A list contains g, q, f which can be used for calculation.
wegene-llc/radmixture documentation built on May 4, 2019, 2:06 a.m.
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Description Usage Arguments Value
Description
Transfer personal genotype raw data to g matrix which the number of row is 1 and the number of column is the number of SNPs used here.
Usage
1 | tfrdpub(genotype, K, map, f)
|
Arguments
genotype |
A data.frame contains your genotype information. |
K |
The number of populations |
map |
A data.frame, it should contain rsid, major allele and minor allele information for both plus and minus strands. |
f |
Frequency matrix learned from reference panel. |
Value
A list contains g, q, f which can be used for calculation.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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