subset_vaf_matrix_by_id: Extract the VAFs of a specific set of variants

In weinstockj/recurrent_somatic_variants: Analyze Somatic Variation

Extract the VAFs of a specific set of variants

Description

Extract the VAFs of a specific set of variants

Usage

subset_vaf_matrix_by_id(
  sample_meta_path,
  variant_meta_path,
  variant_id,
  return_genotypes = FALSE,
  normalize_columns = FALSE
)

Arguments

sample_meta_path	a file path
variant_meta_path	a file path
variant_id	a character vector containing one or more requested variants in the format CHROM-POS-REF-ALT
return_genotypes	a logical value. If TRUE, returns 0 or 1 values. If FALSE, returns VAFs.

Value

a tibble where the first column is the sample identifier, and all remaining columns are the variant mutations or VAFs

weinstockj/recurrent_somatic_variants documentation built on Dec. 31, 2022, 8:52 a.m.