Man pages for weiyi-bitw/cafr
Attractor Metagenes Finding Algorithm
| attractome | List of attractors appears in several different cancer types. |
| Attractor | Class '"Attractor"' |
| attractorScanning | Find all attractors in the dataset |
| attractorScanningGL | Find all genomically-localized attractors in the dataset |
| AttractorSet | Class '"AttractorSet"' |
| brca_pbs | A toy dataset extracted from Wang et al. breast cancer... |
| cafr-package | Attractor Metagenes Finding Algorithm |
| clusterAttractors | Cluster attractors from difference datasets |
| createMetageneSpace | Create metagene-level expression matrix using a given list |
| findAttractor | Finding attractor using the seed gene |
| findGLAttractor | Finding genomically-localized attractor using the seed gene |
| genome | Genomic information of each gene. |
| getCorr | Functions to calculate correlation coefficient |
| getMI | Functions to calculate mutual information |
| loadExpr | Load txt files into matrix or dataframe |
| outputAttractors | Output a table for attractors in the dataset |
| ov | A toy dataset extracted from TCGA OV dataset. |
| parAttractorScanning | Parallelized attractor scanning function |
| probeSummarization | Gene-level expression summarization |
