README.md

In welch16/ChIPexoQualExample: Example data for the ChIPexoQual package, which implements a quality control pipeline for ChIP-exo data

ChIPexoQualExample

Example data for the R package ChIPexoQual. This package contains the reads aligned to chr1 for all replicates of the ChIP-exo FoxA1 on mouse liver cell lines experiment published by Serandour et al., 2013.

References

• The data

Serandour A, Brown G, Cohen J and Carroll J (2013), "Development of an-Illumina based ChIP-exonuclease method provides insight into FoxA1-DNA binding properties", Genome Biology.

• The package

Welch R, Chung D, Grass J, Landick R, and Keles S. "Data Exploration, Quality Control, and Statistical Analysis of ChIP-exo/nexus Experiments" (in preparation)

welch16/ChIPexoQualExample documentation built on July 29, 2021, 7:27 p.m.