Files in welch16/Segvis
Segvis: A package for visualization of high throughput sequencing data along genomic segments
.Rbuildignore
.gitignore
DESCRIPTION
Makefile
NAMESPACE
NEWS
R/AllClasses.R
R/AllGenerics.R
R/Segvis.R
R/base_utilities.R
R/data.R
R/methods-SegvisData.R
README.md
data/segvis.RData
inst/extdata/example/encode_K562_Ctcf_first3chr_Rep1.sort.bam
inst/extdata/example/encode_K562_Ctcf_first3chr_Rep1.sort.bam.bai
inst/extdata/example/encode_K562_Ctcf_first3chr_Rep2.sort.bam
inst/extdata/example/encode_K562_Ctcf_first3chr_Rep2.sort.bam.bai
inst/extdata/example/encode_K562_Ctcf_peaks_first3chr.narrowPeak
inst/extdata/example/encode_K562_H3k27ac_first3chr.sort.bam
inst/extdata/example/encode_K562_H3k27ac_first3chr.sort.bam.bai
inst/extdata/example/encode_K562_H3k4me1_first3chr.sort.bam
inst/extdata/example/encode_K562_H3k4me1_first3chr.sort.bam.bai
inst/extdata/example/encode_K562_H3k4me3_first3chr.sort.bam
inst/extdata/example/encode_K562_H3k4me3_first3chr.sort.bam.bai
inst/extdata/example/encode_K562_dnase_Uw_1_first3chr.narrowPeak
inst/extdata/example/encode_K562_dnase_openChrom_first3chr.narrowPeak
man/DT_profile-methods.Rd
man/DT_region-methods.Rd
man/Segvis.Rd
man/SegvisData.Rd
man/bwd_covers-methods.Rd
man/covers-methods.Rd
man/files-methods.Rd
man/find_summits-methods.Rd
man/frag_len-methods.Rd
man/fwd_covers-methods.Rd
man/is_pet-methods.Rd
man/nreads-methods.Rd
man/overlap_matrix-methods.Rd
man/plot_heatmap-methods.Rd
man/plot_profile-methods.Rd
man/plot_region-methods.Rd
man/readBedFile.Rd
vignettes/vignette.Rmd
