leukstats: Test Statistics from Gloub (1999) Leukemia data set

In weltybiostat/sgpv: Calculate Second-Generation p-Values and Associated Measures

Description

Data are from 7218 gene specific t-tests for a difference in mean expression (on the log scale; AML versus ALL) in the Gloub data set (1999). Data are from 72 patients using a pooled t-test (df=70). Included in the dataframe are the following: t-statistic (t.stat), p-value (p.value), CI lower limit (ci.lo), CI upper limit (ci.hi), estimate (estimate), standard error (se).

Usage

data(leukstats)

Format

An object of class data.frame. Includes the following: t-statistic (t.stat), p-value (p.value), CI lower limit (ci.lo), CI upper limit (ci.hi), estimate (estimate), standard error (se).

Source

https://github.com/ramhiser/datamicroarray/wiki/Golub-(1999)

References

Gloub (1999) and used in Blume et. al. (2018) PlosONE.

Blume JD, D’Agostino McGowan L, Dupont WD, Greevy RA Jr. (2018). Second-generation p-values: Improved rigor, reproducibility, & transparency in statistical analyses. PLoS ONE 13(3): e0188299. https://doi.org/10.1371/journal.pone.0188299

Examples

data(leukstats)
order(leukstats$p.value)

weltybiostat/sgpv documentation built on Nov. 23, 2020, 11:35 p.m.