wennj/bacsnp: Analyzing single nucleotide polymorphisms from baculovirus sequencing data

A tool for analyzing VCF files based on multipe sequenced baculovirus isolates mapped to a common reference sequence. Specifities of single nucleotide polymorphic (SNP) sites to a certain isolate or multiple isolates are determined and relative frequencies of alternative nucleotides are analyzed.

Getting started

Package details

MaintainerJoerg Wennmann <bacsnp@gmail.com>
URL http://github.com/wennj/bacsnp
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
wennj/bacsnp documentation built on July 13, 2020, 1:19 p.m.