PlotValues.Gene.SingleCell.10x: Violin plot of single-cell PSI values vs cell groups

In wenweixiong/MARVEL: Revealing Splicing Dynamics at Single-Cell Resolution

Violin plot of single-cell PSI values vs cell groups

Description

Violin plot of single-cell PSI values on the y-axis against cell groups on the x-axis.

Usage

PlotValues.Gene.SingleCell.10x(
  MarvelObject,
  cell.group.list,
  gene_short_name,
  log2.transform = TRUE,
  cell.group.colors = NULL,
  xlabels.size = 8,
  alpha = 0.5
)

Arguments

MarvelObject	Marvel object. S3 object generated from CheckAlignment.10x function.
cell.group.list	List of character strings. Each element in the list is a cell group. The label of each element of the list represents the cell group label.
gene_short_name	Character string. Gene name whose expression will be plotted.
log2.transform	Logical value. If set to TRUE (default), normalised gene expression values will be off-set by 1 and then log2-transformed prior to plotting.
cell.group.colors	Vector of character strings. Colors of cell groups and should be same length as cell.group.list. Default ggplot2 colors are used.
xlabels.size	Numeric value. Font size of x-tick labels. Default is 10.
alpha	Numeric value. Transparency of the data points. Takes any values between 0-1. Default value is 0.5.

Value

An object of class S3 with new slots MarvelObject$adhocPlot$ViolinPlot$SingleCell$Plot and MarvelObject$adhocPlot$ViolinPlot$SingleCell$Data.

wenweixiong/MARVEL documentation built on Aug. 5, 2024, 2:54 p.m.