PrepareBedFile.RI: Preprocess rMATS retained intron (RI) coordinates for...
In wenweixiong/MARVEL: Revealing Splicing Dynamics at Single-Cell Resolution
View source: R/Script_PLATE_00_rMATS_06_CreateBedFile_RI.R
PrepareBedFile.RI R Documentation
Preprocess rMATS retained intron (RI) coordinates for Bedtools
Description
Preprocess rMATS retained intron (RI) coordinates into a BED file suitable for counting intronic coverage with Bedtools
Usage
PrepareBedFile.RI(file)
Arguments
file
Data frame. Tab-delimited file output from rMATS. Typically the file is named fromGTF.RI.txt.
Value
An object of class data frame that may be used as input for MARVEL
wenweixiong/MARVEL documentation built on Aug. 5, 2024, 2:54 p.m.
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View source: R/Script_PLATE_00_rMATS_06_CreateBedFile_RI.R
| PrepareBedFile.RI | R Documentation |
Preprocess rMATS retained intron (RI) coordinates for Bedtools
Description
Preprocess rMATS retained intron (RI) coordinates into a BED file suitable for counting intronic coverage with Bedtools
Usage
PrepareBedFile.RI(file)
Arguments
file |
Data frame. Tab-delimited file output from rMATS. Typically the file is named |
Value
An object of class data frame that may be used as input for MARVEL
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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