Preprocess_rMATS.RI: Preprocess rMATS retained intron (RI) coordinates
In wenweixiong/MARVEL: Revealing Splicing Dynamics at Single-Cell Resolution
View source: R/Script_PLATE_00_rMATS_03_CreateFeatureData_RI.R
Preprocess_rMATS.RI R Documentation
Preprocess rMATS retained intron (RI) coordinates
Description
Preprocess rMATS retained intron (RI) coordinates for MARVEL input and annotate the gene type for each gene using the GTF provided.
Usage
Preprocess_rMATS.RI(file, GTF)
Arguments
file
Data frame. Tab-delimited file output from rMATS. Typically the file is named fromGTF.RI.txt.
GTF
Data frame. The same GTF file used in the rMATS step.
Value
An object of class data frame that may be used as input for MARVEL
wenweixiong/MARVEL documentation built on Aug. 5, 2024, 2:54 p.m.
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View source: R/Script_PLATE_00_rMATS_03_CreateFeatureData_RI.R
| Preprocess_rMATS.RI | R Documentation |
Preprocess rMATS retained intron (RI) coordinates
Description
Preprocess rMATS retained intron (RI) coordinates for MARVEL input and annotate the gene type for each gene using the GTF provided.
Usage
Preprocess_rMATS.RI(file, GTF)
Arguments
file |
Data frame. Tab-delimited file output from rMATS. Typically the file is named |
GTF |
Data frame. The same GTF file used in the rMATS step. |
Value
An object of class data frame that may be used as input for MARVEL
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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