Preprocess_rMATS: Preprocess rMATS files for MARVEL
In wenweixiong/MARVEL: Revealing Splicing Dynamics at Single-Cell Resolution
View source: R/Script_PLATE_00_rMATS_00_CreateFeatureData.R
Preprocess_rMATS R Documentation
Preprocess rMATS files for MARVEL
Description
Preprocess rMATS coordinates for MARVEL input and annotate the gene type for each gene using the GTF provided.
Usage
Preprocess_rMATS(file, GTF, EventType)
Arguments
file
Data frame. Tab-delimited file output from rMATS. Typically the file is named fromGTF.*.txt.
GTF
Data frame. The same GTF file used in the rMATS step.
event_type.
Indicate the type of splicing event. Options are "SE", "MXE", "RI", "A5SS", or "A3SS".
Value
An object of class data frame that may be used as input for MARVEL
wenweixiong/MARVEL documentation built on Aug. 5, 2024, 2:54 p.m.
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View source: R/Script_PLATE_00_rMATS_00_CreateFeatureData.R
| Preprocess_rMATS | R Documentation |
Preprocess rMATS files for MARVEL
Description
Preprocess rMATS coordinates for MARVEL input and annotate the gene type for each gene using the GTF provided.
Usage
Preprocess_rMATS(file, GTF, EventType)
Arguments
file |
Data frame. Tab-delimited file output from rMATS. Typically the file is named |
GTF |
Data frame. The same GTF file used in the rMATS step. |
event_type. |
Indicate the type of splicing event. Options are |
Value
An object of class data frame that may be used as input for MARVEL
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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