Files in wenweixiong/VALERIE
Visualising Splicing at Single-Cell Resolution
DESCRIPTION
NAMESPACE
R/Script_01_0_PlotPSI.R
R/Script_01_10_PlotPSI_A3SS_NegativeStrand.R
R/Script_01_1_PlotPSI_SE_PositiveStrand.R
R/Script_01_2_PlotPSI_SE_NegativeStrand.R
R/Script_01_3_PlotPSI_MXE_PositiveStrand.R
R/Script_01_4_PlotPSI_MXE_NegativeStrand.R
R/Script_01_5_PlotPSI_RI_PositiveStrand.R
R/Script_01_6_PlotPSI_RI_NegativeStrand.R
R/Script_01_7_PlotPSI_A5SS_PositiveStrand.R
R/Script_01_8_PlotPSI_A5SS_NegativeStrand.R
R/Script_01_9_PlotPSI_A3SS_PositiveStrand.R
README.md
build/vignette.rds
inst/.DS_Store
inst/doc/VALERIE.R
inst/doc/VALERIE.Rmd
inst/doc/VALERIE.html
inst/extdata/BAM/SRR7103107_STAR_aligned_2ndPass_Aligned.sortedByCoord.out.bam
inst/extdata/BAM/SRR7103107_STAR_aligned_2ndPass_Aligned.sortedByCoord.out.bam.bai
inst/extdata/BAM/SRR7103235_STAR_aligned_2ndPass_Aligned.sortedByCoord.out.bam
inst/extdata/BAM/SRR7103235_STAR_aligned_2ndPass_Aligned.sortedByCoord.out.bam.bai
inst/extdata/BAM/SRR7103236_STAR_aligned_2ndPass_Aligned.sortedByCoord.out.bam
inst/extdata/BAM/SRR7103236_STAR_aligned_2ndPass_Aligned.sortedByCoord.out.bam.bai
inst/extdata/BAM/SRR7103238_STAR_aligned_2ndPass_Aligned.sortedByCoord.out.bam
inst/extdata/BAM/SRR7103238_STAR_aligned_2ndPass_Aligned.sortedByCoord.out.bam.bai
inst/extdata/BAM/SRR7103242_STAR_aligned_2ndPass_Aligned.sortedByCoord.out.bam
inst/extdata/BAM/SRR7103242_STAR_aligned_2ndPass_Aligned.sortedByCoord.out.bam.bai
inst/extdata/BAM/SRR7103248_STAR_aligned_2ndPass_Aligned.sortedByCoord.out.bam
inst/extdata/BAM/SRR7103248_STAR_aligned_2ndPass_Aligned.sortedByCoord.out.bam.bai
inst/extdata/BAM/SRR7103255_STAR_aligned_2ndPass_Aligned.sortedByCoord.out.bam
inst/extdata/BAM/SRR7103255_STAR_aligned_2ndPass_Aligned.sortedByCoord.out.bam.bai
inst/extdata/BAM/SRR7103263_STAR_aligned_2ndPass_Aligned.sortedByCoord.out.bam
inst/extdata/BAM/SRR7103263_STAR_aligned_2ndPass_Aligned.sortedByCoord.out.bam.bai
inst/extdata/BAM/SRR7103268_STAR_aligned_2ndPass_Aligned.sortedByCoord.out.bam
inst/extdata/BAM/SRR7103268_STAR_aligned_2ndPass_Aligned.sortedByCoord.out.bam.bai
inst/extdata/BAM/SRR7103277_STAR_aligned_2ndPass_Aligned.sortedByCoord.out.bam
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inst/extdata/BAM/SRR7103286_STAR_aligned_2ndPass_Aligned.sortedByCoord.out.bam
inst/extdata/BAM/SRR7103286_STAR_aligned_2ndPass_Aligned.sortedByCoord.out.bam.bai
inst/extdata/BAM/SRR7103287_STAR_aligned_2ndPass_Aligned.sortedByCoord.out.bam
inst/extdata/BAM/SRR7103287_STAR_aligned_2ndPass_Aligned.sortedByCoord.out.bam.bai
inst/extdata/BAM/SRR7103290_STAR_aligned_2ndPass_Aligned.sortedByCoord.out.bam
inst/extdata/BAM/SRR7103290_STAR_aligned_2ndPass_Aligned.sortedByCoord.out.bam.bai
inst/extdata/BAM/SRR7103296_STAR_aligned_2ndPass_Aligned.sortedByCoord.out.bam
inst/extdata/BAM/SRR7103296_STAR_aligned_2ndPass_Aligned.sortedByCoord.out.bam.bai
inst/extdata/BAM/SRR7103347_STAR_aligned_2ndPass_Aligned.sortedByCoord.out.bam
inst/extdata/BAM/SRR7103347_STAR_aligned_2ndPass_Aligned.sortedByCoord.out.bam.bai
inst/extdata/BAM/SRR7103349_STAR_aligned_2ndPass_Aligned.sortedByCoord.out.bam
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inst/extdata/BAM/SRR7103385_STAR_aligned_2ndPass_Aligned.sortedByCoord.out.bam
inst/extdata/BAM/SRR7103385_STAR_aligned_2ndPass_Aligned.sortedByCoord.out.bam.bai
inst/extdata/BAM/SRR7103395_STAR_aligned_2ndPass_Aligned.sortedByCoord.out.bam
inst/extdata/BAM/SRR7103395_STAR_aligned_2ndPass_Aligned.sortedByCoord.out.bam.bai
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inst/extdata/BAM/SRR7103415_STAR_aligned_2ndPass_Aligned.sortedByCoord.out.bam.bai
inst/extdata/BAM/SRR7103425_STAR_aligned_2ndPass_Aligned.sortedByCoord.out.bam
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inst/extdata/BAM/SRR7103439_STAR_aligned_2ndPass_Aligned.sortedByCoord.out.bam.bai
inst/extdata/BAM/SRR7103440_STAR_aligned_2ndPass_Aligned.sortedByCoord.out.bam
inst/extdata/BAM/SRR7103440_STAR_aligned_2ndPass_Aligned.sortedByCoord.out.bam.bai
inst/extdata/BAM/SRR7103450_STAR_aligned_2ndPass_Aligned.sortedByCoord.out.bam
inst/extdata/BAM/SRR7103450_STAR_aligned_2ndPass_Aligned.sortedByCoord.out.bam.bai
inst/extdata/BAM/SRR7103463_STAR_aligned_2ndPass_Aligned.sortedByCoord.out.bam
inst/extdata/BAM/SRR7103463_STAR_aligned_2ndPass_Aligned.sortedByCoord.out.bam.bai
inst/extdata/BAM/SRR7103466_STAR_aligned_2ndPass_Aligned.sortedByCoord.out.bam
inst/extdata/BAM/SRR7103466_STAR_aligned_2ndPass_Aligned.sortedByCoord.out.bam.bai
inst/extdata/BAM/SRR7103482_STAR_aligned_2ndPass_Aligned.sortedByCoord.out.bam
inst/extdata/BAM/SRR7103482_STAR_aligned_2ndPass_Aligned.sortedByCoord.out.bam.bai
inst/extdata/BAM/SRR7103484_STAR_aligned_2ndPass_Aligned.sortedByCoord.out.bam
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inst/extdata/BAM/SRR7103509_STAR_aligned_2ndPass_Aligned.sortedByCoord.out.bam
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inst/extdata/BAM/SRR7103513_STAR_aligned_2ndPass_Aligned.sortedByCoord.out.bam.bai
inst/extdata/BAM/SRR7103518_STAR_aligned_2ndPass_Aligned.sortedByCoord.out.bam
inst/extdata/BAM/SRR7103518_STAR_aligned_2ndPass_Aligned.sortedByCoord.out.bam.bai
inst/extdata/BAM/SRR7103541_STAR_aligned_2ndPass_Aligned.sortedByCoord.out.bam
inst/extdata/BAM/SRR7103541_STAR_aligned_2ndPass_Aligned.sortedByCoord.out.bam.bai
inst/extdata/BAM/SRR7103563_STAR_aligned_2ndPass_Aligned.sortedByCoord.out.bam
inst/extdata/BAM/SRR7103563_STAR_aligned_2ndPass_Aligned.sortedByCoord.out.bam.bai
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inst/extdata/BAM/SRR7103583_STAR_aligned_2ndPass_Aligned.sortedByCoord.out.bam.bai
inst/extdata/BAM/SRR7103586_STAR_aligned_2ndPass_Aligned.sortedByCoord.out.bam
inst/extdata/BAM/SRR7103586_STAR_aligned_2ndPass_Aligned.sortedByCoord.out.bam.bai
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inst/extdata/BAM/SRR7103589_STAR_aligned_2ndPass_Aligned.sortedByCoord.out.bam
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inst/extdata/BAM/SRR7103591_STAR_aligned_2ndPass_Aligned.sortedByCoord.out.bam
inst/extdata/BAM/SRR7103591_STAR_aligned_2ndPass_Aligned.sortedByCoord.out.bam.bai
inst/extdata/BAM/SRR7103969_STAR_aligned_2ndPass_Aligned.sortedByCoord.out.bam
inst/extdata/BAM/SRR7103969_STAR_aligned_2ndPass_Aligned.sortedByCoord.out.bam.bai
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inst/extdata/BAM/SRR7103974_STAR_aligned_2ndPass_Aligned.sortedByCoord.out.bam.bai
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inst/extdata/BAM/SRR7104038_STAR_aligned_2ndPass_Aligned.sortedByCoord.out.bam
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inst/extdata/BAM/SRR7104282_STAR_aligned_2ndPass_Aligned.sortedByCoord.out.bam
inst/extdata/BAM/SRR7104282_STAR_aligned_2ndPass_Aligned.sortedByCoord.out.bam.bai
inst/extdata/BAM/SRR7104290_STAR_aligned_2ndPass_Aligned.sortedByCoord.out.bam
inst/extdata/BAM/SRR7104290_STAR_aligned_2ndPass_Aligned.sortedByCoord.out.bam.bai
inst/extdata/BAM/SRR7104298_STAR_aligned_2ndPass_Aligned.sortedByCoord.out.bam
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inst/extdata/BAM/SRR7104299_STAR_aligned_2ndPass_Aligned.sortedByCoord.out.bam
inst/extdata/BAM/SRR7104299_STAR_aligned_2ndPass_Aligned.sortedByCoord.out.bam.bai
inst/extdata/BAM/SRR7104303_STAR_aligned_2ndPass_Aligned.sortedByCoord.out.bam
inst/extdata/BAM/SRR7104303_STAR_aligned_2ndPass_Aligned.sortedByCoord.out.bam.bai
inst/extdata/BAM/SRR7104311_STAR_aligned_2ndPass_Aligned.sortedByCoord.out.bam
inst/extdata/BAM/SRR7104311_STAR_aligned_2ndPass_Aligned.sortedByCoord.out.bam.bai
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inst/extdata/BAM/SRR7104322_STAR_aligned_2ndPass_Aligned.sortedByCoord.out.bam
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inst/extdata/BAM/SRR7104356_STAR_aligned_2ndPass_Aligned.sortedByCoord.out.bam
inst/extdata/BAM/SRR7104356_STAR_aligned_2ndPass_Aligned.sortedByCoord.out.bam.bai
inst/extdata/BAM/SRR7104514_STAR_aligned_2ndPass_Aligned.sortedByCoord.out.bam
inst/extdata/BAM/SRR7104514_STAR_aligned_2ndPass_Aligned.sortedByCoord.out.bam.bai
inst/extdata/BAM/SRR7104533_STAR_aligned_2ndPass_Aligned.sortedByCoord.out.bam
inst/extdata/BAM/SRR7104533_STAR_aligned_2ndPass_Aligned.sortedByCoord.out.bam.bai
inst/extdata/BAM/SRR7104561_STAR_aligned_2ndPass_Aligned.sortedByCoord.out.bam
inst/extdata/BAM/SRR7104561_STAR_aligned_2ndPass_Aligned.sortedByCoord.out.bam.bai
inst/extdata/BAM/SRR7104562_STAR_aligned_2ndPass_Aligned.sortedByCoord.out.bam
inst/extdata/BAM/SRR7104562_STAR_aligned_2ndPass_Aligned.sortedByCoord.out.bam.bai
inst/extdata/BAM/SRR7104619_STAR_aligned_2ndPass_Aligned.sortedByCoord.out.bam
inst/extdata/BAM/SRR7104619_STAR_aligned_2ndPass_Aligned.sortedByCoord.out.bam.bai
inst/extdata/BAM/SRR7104711_STAR_aligned_2ndPass_Aligned.sortedByCoord.out.bam
inst/extdata/BAM/SRR7104711_STAR_aligned_2ndPass_Aligned.sortedByCoord.out.bam.bai
inst/extdata/BAM/SRR7104723_STAR_aligned_2ndPass_Aligned.sortedByCoord.out.bam
inst/extdata/BAM/SRR7104723_STAR_aligned_2ndPass_Aligned.sortedByCoord.out.bam.bai
inst/extdata/BAM/SRR7104762_STAR_aligned_2ndPass_Aligned.sortedByCoord.out.bam
inst/extdata/BAM/SRR7104762_STAR_aligned_2ndPass_Aligned.sortedByCoord.out.bam.bai
inst/extdata/BAM/SRR7104791_STAR_aligned_2ndPass_Aligned.sortedByCoord.out.bam
inst/extdata/BAM/SRR7104791_STAR_aligned_2ndPass_Aligned.sortedByCoord.out.bam.bai
inst/extdata/BAM/SRR7104861_STAR_aligned_2ndPass_Aligned.sortedByCoord.out.bam
inst/extdata/BAM/SRR7104861_STAR_aligned_2ndPass_Aligned.sortedByCoord.out.bam.bai
inst/extdata/BAM/SRR7104972_STAR_aligned_2ndPass_Aligned.sortedByCoord.out.bam
inst/extdata/BAM/SRR7104972_STAR_aligned_2ndPass_Aligned.sortedByCoord.out.bam.bai
inst/extdata/BAM/SRR7105011_STAR_aligned_2ndPass_Aligned.sortedByCoord.out.bam
inst/extdata/BAM/SRR7105011_STAR_aligned_2ndPass_Aligned.sortedByCoord.out.bam.bai
inst/extdata/BAM/SRR7105040_STAR_aligned_2ndPass_Aligned.sortedByCoord.out.bam
inst/extdata/BAM/SRR7105040_STAR_aligned_2ndPass_Aligned.sortedByCoord.out.bam.bai
inst/extdata/BAM/SRR7105057_STAR_aligned_2ndPass_Aligned.sortedByCoord.out.bam
inst/extdata/BAM/SRR7105057_STAR_aligned_2ndPass_Aligned.sortedByCoord.out.bam.bai
inst/extdata/BAM/SRR7105061_STAR_aligned_2ndPass_Aligned.sortedByCoord.out.bam
inst/extdata/BAM/SRR7105061_STAR_aligned_2ndPass_Aligned.sortedByCoord.out.bam.bai
inst/extdata/BAM_PhenoData.txt
inst/extdata/BAM_PhenoData_Small.txt
inst/extdata/Cover_Figure.png
inst/extdata/Plots/Mbp.pdf
inst/extdata/Plots/Mbp.png
man/PlotPSI.A3SS.Neg.Rd
man/PlotPSI.A3SS.Pos.Rd
man/PlotPSI.A5SS.Neg.Rd
man/PlotPSI.A5SS.Pos.Rd
man/PlotPSI.MXE.Neg.Rd
man/PlotPSI.MXE.Pos.Rd
man/PlotPSI.RI.Neg.Rd
man/PlotPSI.RI.Pos.Rd
man/PlotPSI.Rd
man/PlotPSI.SE.Neg.Rd
man/PlotPSI.SE.Pos.Rd
vignettes/VALERIE.Rmd
