Man pages for wesleyburr/subMaldi
Organization and Processing of MALDI-MS Datasets
| After1 | Pairwise Spectral Data Frame from Sample |
| After2 | Pairwise Spectral Data Frame from Sample |
| avgSpectra | Average Spectral Replicates |
| baselineCorr | Baseline Correction |
| Before1 | Pairwise Spectral Data Frame from Sample |
| Before2 | Pairwise Spectral Data Frame from Sample |
| Blank1 | Pairwise Spectral Data from Matrix Blank |
| Blank2 | Pairwise Spectral Data from Matrix Blank |
| bsline | Raw Spectrum with Irregular Baseline |
| createSpecDF | Create Empty Spectral Data Frame |
| find_max | Find Peak Maxima |
| find_max_set | Find Most Intense Peak of a Set |
| mapSpectrum | Map Spectrum to _m/z_ Vector |
| Master | Master Data Frame (High Resolution) |
| Master2 | Master Data Frame (Low Resolution) |
| normMethod_custimp | Normalization Method: Maximum Intensity of Set |
| normMethod_custom | Normalize Peak Intensity to Custom _m/z_ |
| normMethod_max | Normalization Method: Maximum Intensity |
| normMethod_max_set | Normalization Method: Maximum Intensity of Set |
| normMethod_median | Normalize a Spectral Dataset to its Median Intensity |
| normMethod_quantile | Normalize Distribution of Intensities |
| normMethod_rel_TIC | Normalize Relative Peak Intensity by Total Ion Current |
| normMethod_RMS | Normalize Spectral Intensity by Root Mean Square |
| normMethod_stdev | Normalize Spectrum to Standard Deviation of Noise |
| normMethod_TIC | Normalize Peak Intensity by Total Ion Current |
| normSpectra | Normalize Spectral Data |
| peakDet | Peak Detection |
| plotSpectra | Plot and Compare Spectra |
| read_ascii | Read Raw ASCII Files |
| readcsvDir | Import .csv Spectra from a Directory and Export |
| readcsvSpec | Import a Single .csv Spectrum |
| rmveEmpty | Remove Empty Rows |
| smoothSpectrum | Smooth Noise in Spectrum |
| subMALDI-package | subMALDI: Organization and Processing of MALDI-MS Datasets |
| subSpectra | Subtract Blank Peaks from Sample Spectra |
