Man pages for wevanjohnson/animalcules.preprocess
This package contains tools and functions for preprocessing microbiome data
| align_target | Align microbiome reads to a set of reference libraries |
| animalcules_id | Animalcules ID |
| bam_reheader_R | Replace the header from a .bam file |
| combined_header | Create a combined .bam header |
| demultiplex | Demultiplexing sequencing reads |
| download_refseq | Download RefSeq genome libraries |
| extractReads | Helper function for demultiplexing |
| filter_unmapped_reads | Filter unmapped reads |
| merge_bam_files | Merge multiple .bam files |
| mk_subread_index | Make a Subread index |
