xcombr_specificities: Display predefined crosslinker specificities

In wfondrie/xcombr: Identifing crosslinked peptides with standard search engines.

Description

Display predefined crosslinker specificities

Usage

xcombr_specificities()

Details

The data frame returned contains three columns defining the terms for the xlSpecificity argument of xcombr_db and the regular expressions used to find the reaction sites. In these regular expression columns (rxn site 1 and rxn site 2), the lowercase n and c indicate the n-terminus and c-terminus, respectively. The listed regular expressions can be used as a template to define custom specificities using the customSpecificity argument of xcombr_db

Value

A data frame containing details of the predefined crosslinker specificities.

Examples

# Print crosslinker specificities
xcombr_specificities()

wfondrie/xcombr documentation built on May 7, 2019, 9:34 a.m.