hapmap_am368: Genotype file.
In whweve/wisassoplot2: visualize genome-wide association study with gene annotation and linkage disequiblism
Description
A dataset containing the genotype file. The variables are as follows:
A dataset containing the genotype file. The variables see hapmap_am368
Usage
1
2
3
Format
:
- rs
contains the SNP identifier.
- alleles
contains SNP alleles according to NCBI database dbSNP.
- chrom
contains the chromosome that the SNP was mapped.
- pos
contains the respective position of this SNP on chromosome.
- strand
contains the orientation of the SNP in the DNA strand. Thus, SNPs could be in the forward (+) or in the reverse (-) orientation relative to the reference genome.
- assembly
contains the version of reference sequence assembly (from NCBI).
- center
contains the name of genotyping center that produced the genotypes.
- protLSID
contains the identifier for HapMap protocol.
- assayLSID
contain the identifier HapMap assay used for genotyping.
- panelLSID
contains the identifier for panel of individuals genotyped.
- QCcode
contains the quality control for all entries.
subsequently, the list of sample names.
whweve/wisassoplot2 documentation built on May 15, 2019, 9:56 p.m.
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Description
A dataset containing the genotype file. The variables are as follows:
A dataset containing the genotype file. The variables see hapmap_am368
Usage
1 2 3 |
Format
:
- rs
contains the SNP identifier.
- alleles
contains SNP alleles according to NCBI database dbSNP.
- chrom
contains the chromosome that the SNP was mapped.
- pos
contains the respective position of this SNP on chromosome.
- strand
contains the orientation of the SNP in the DNA strand. Thus, SNPs could be in the forward (+) or in the reverse (-) orientation relative to the reference genome.
- assembly
contains the version of reference sequence assembly (from NCBI).
- center
contains the name of genotyping center that produced the genotypes.
- protLSID
contains the identifier for HapMap protocol.
- assayLSID
contain the identifier HapMap assay used for genotyping.
- panelLSID
contains the identifier for panel of individuals genotyped.
- QCcode
contains the quality control for all entries.
subsequently, the list of sample names.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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