quake_all_fpkm: Single cell RNA-Seq data extracted from a publication by...
In wikiselev/SC3-old: Single-Cell Consensus Clustering

Source: Treutlein, B. et al. Reconstructing lineage hierarchies of the distal lung epithelium using single-cell RNA-seq. Nature 509, 371<e2><80><93>375 (2014).

1	quake_all_fpkm

 num [1:23271, 1:80] 0 0 0 0 0 0 0 0 0 0 ...
 - attr(*, "dimnames")=List of 2
  ..$ : chr [1:23271] "0610005C13Rik" "0610007C21Rik" "0610007L01Rik" "0610007N19Rik" ...
  ..$ : chr [1:80] "2" "4" "3" "2" ...

http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE52583

Columns represent cells, rows represent genes expression values. Colnames respresent indexes of cell clusters (known information based on the experimental protocol). There are 80 cells and 5 clusters in this dataset.

wikiselev/SC3-old documentation built on May 4, 2019, 5:25 a.m.