| ggsurface | Plot Model Surface with ggplot2 |
| lmerPredictionPlot | lmerPredictionPlot |
| nans.remove | Remove nans from an object |
| plot_upgma | Plot UPGMA phylo objects |
| relative | Relative abundance calculation |
| renkonen | Renkonen's Similarity index with bootstrap |
| renkonen.c | A caller for calculating the Renkonen's index |
| renkonen.index | Renkonen equation |
| simulate_data | Simulate a community data |
| tree_consensus | Compute tree consensus for multiple trees |
| upgma | UPGMA calculation |
| upgma.c | UPGMA calc core |
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