| ggsurface | Plot Model Surface with ggplot2 | 
| lmerPredictionPlot | lmerPredictionPlot | 
| nans.remove | Remove nans from an object | 
| plot_upgma | Plot UPGMA phylo objects | 
| relative | Relative abundance calculation | 
| renkonen | Renkonen's Similarity index with bootstrap | 
| renkonen.c | A caller for calculating the Renkonen's index | 
| renkonen.index | Renkonen equation | 
| simulate_data | Simulate a community data | 
| tree_consensus | Compute tree consensus for multiple trees | 
| upgma | UPGMA calculation | 
| upgma.c | UPGMA calc core | 
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