plot_upgma: Plot UPGMA phylo objects
In wilsonfrantine/R4eco: Set of functions to help ecologists
View source: R/basics_utilities.R
plot_upgma R Documentation
Plot UPGMA phylo objects
Description
Users can directly plot a single tree or the consensus of a multiPhylo object. The consensus is controled by the function tree_consensus.
Usage
plot_upgma(tree, ...)
Arguments
tree
a single tree or a set of trees in a multiPhylo object
...
parameters of the tree_consensus function
Author(s)
Wilson Frantine-Silva <wilsonfrantine@gmail.com>
See Also
tree_consensus() upgma()
Examples
df <- simulate_data()
S <- renkonen(df, 100)
trees <- upgma(S)
plot_upgma(trees, "mcc")
wilsonfrantine/R4eco documentation built on Jan. 30, 2024, 4:55 p.m.
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View source: R/basics_utilities.R
| plot_upgma | R Documentation |
Plot UPGMA phylo objects
Description
Users can directly plot a single tree or the consensus of a multiPhylo object. The consensus is controled by the function tree_consensus.
Usage
plot_upgma(tree, ...)
Arguments
tree |
a single tree or a set of trees in a multiPhylo object |
... |
parameters of the tree_consensus function |
Author(s)
Wilson Frantine-Silva <wilsonfrantine@gmail.com>
See Also
tree_consensus() upgma()
Examples
df <- simulate_data()
S <- renkonen(df, 100)
trees <- upgma(S)
plot_upgma(trees, "mcc")
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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