convert: Convert MRM-MS files to LC-MS style files
In wilsontom/MRMConverteR: Convert MRM-MS .mzML files to LC-MS style .mzML files

Description Usage Arguments Details Author(s)

Convert MRM-MS .mzML files which contain a series of time-intensity pairs (chromatograms) to a series of LC-MS scan style m/z-intensity pairs.

1	convert(input, outpath, return = FALSE)

`input`	a character stirng of the absolute file path of a MRM-MS `.mzML` file
`outpath`	a character string of the location to save converted files to. If `NULL` then `return` must be `TRUE`
`return`	logical; if `TRUE` then the 'peaks' list is returned from the function. `Default is FALSE`.

Once the data is represented as a matrix of m/z and intensity pairs for each scan; the data can be further processed by open source tools such as xcms.

Tom Wilson tpw2@aber.ac.uk

wilsontom/MRMConverteR documentation built on May 20, 2019, 5:59 p.m.