NEWS.md

In wincowgerDEV/OpenSpecy: Analyze, Process, Identify, and Share Raman and (FT)IR Spectra

OpenSpecy 1.5.0

Major

• Update to vignettes for new functionality.
• Improved plots
• Improved tests for Open Specy format.
• Improved reading of csv files.
• Improved reading of spa files.
• Extended options for library version downloads.
• Simpler function calling
• Extended baseline fitting options.

OpenSpecy 1.3.0

Major

• added 2 new libraries a nobaseline and derivative version of medioid and model
• Created new function for spatial smooth without reading envi files
• Allow adj_intens to work on vectors or Open Specy objects

Minor

• fixed bug with mac reading libraries

OpenSpecy 1.2.0

Potentially Breaking

• Removed share data options in all functions. They just weren't useful to users at all and were more of an administrative thing. Keeping them forced us to be incompatible with webR.

Major

• added support for siMPle files.
• added support for xyz files.
• added support for img files.
• improved interactive plot popups.
• changed how libraries are downloaded to avoid osfr pacakage.
• increased support for options when collapsing maps.
• avoid forcing min-max relative plots in interactive mode.
• create static map option.

OpenSpecy 1.1.0

Minor Improvements

• updated links

OpenSpecy 1.0.9

Minor Improvements

• more closing and flexibility options

OpenSpecy 1.0.8

Minor Improvements

• updated manage_na, spec_res, read_any for easier flow with the app

OpenSpecy 1.0.7

Minor Improvements

• Modified manage_na.R
• Added to NAMESPACE

OpenSpecy 1.0.6

Minor Improvements

• Add attributes to OpenSpecy objects
• More flexible sig_noise()
• Simpler matching

OpenSpecy 1.0.5

Minor Improvements

• Support .tsv files

Bug Fixes

• Flip xy coordinates in ENVI files

OpenSpecy 1.0.4

Minor Improvements

• More contributors
• showlegend argument for interactive plots

Bug Fixes

• Fixes a fatal error in match_spec() probably causing incorrect identifications

OpenSpecy 1.0.3

Minor Improvements

• Simplify check_OpenSpecy()
• Improve unit tests
• Improve interactive plots

OpenSpecy 1.0.2

Bug Fixes

• Set data.table threads to 2 for (CRAN) checks

OpenSpecy 1.0.1

Bug Fixes

• Fixed spelling mistakes
• Reduced example and test run times for CRAN

OpenSpecy 1.0.0

New Features

• Complete package, app, and SOP overhaul!
• The Shiny app has been outsourced to an own GitHub repository: https://github.com/wincowgerDEV/OpenSpecy-shiny
• Spectra are now stored in dedicated OpenSpecy objects, which can be managed with a set of new functions including c_spec() for concatenating spectra or converting them back to tables
• Various functions have been renamed and improved, for instance, to facilitate reading (and writing) spectral files
• New functions include def_features() to identify microplastics in spectral maps and ai_classify() to use AI for matching/identifying spectra

Minor Improvements

• Added pkgdown documentation
• Added code coverage tests

OpenSpecy 0.9.5

Bug Fixes

• Fixed outdated links and redirects

OpenSpecy 0.9.4

Minor Improvements

• UI improvements
• Gitter support

Bug Fixes

• Fixed invalid regex failing CRAN checks

OpenSpecy 0.9.3

Minor Improvements

• Better error handling for .csv formats
• Add funders and goals
• Updated package citation
• CI testing for Mac

Bug Fixes

• Fixed testthat routines occasionally failing CRAN checks

OpenSpecy 0.9.2

New Features

• Manual baseline corrections
• Citable technical note

Minor Improvements

• More generic .spa file reading
• Added funding

Bug Fixes

• UI improvements

OpenSpecy 0.9.1

Bug Fixes

• Checks fail gracefully if api.osf.io is not reachable
• Adjust UI selectors to comply with inverse axis and not exceed ranges

OpenSpecy 0.9.0

New Features

• UI overhaul
• Give more control to the user when starting via run_app()

Minor Improvements

• Reverse spectral axes to comply with most wavenumber scales
• Let users select metadata license
• Improved data sharing and logging capabilities
• Google Analytics removed

Bug Fixes

• Use tempdir for unit tests and examples

OpenSpecy 0.8.2

Minor Improvements

• Compliance with CRAN style guide
• More references with DOIs
• Better error/warning messages during Shiny file input

Bug Fixes

• Fixed bug with Shiny reactive values

OpenSpecy 0.8.1

Bug Fixes

• Fix redirecting URLs

OpenSpecy 0.8.0

New Features

• Use external Open Specy libraries from OSF
• read_asp() for reading Agilent .asp files
• GUI overhaul
• Comprehensive package vignette and function documentation
• Unit testing for main functions

Minor Improvements

• Better error handling
• Stripped down dependencies

OpenSpecy 0.7.0

• Transferred code base from openspecy.org to this R package

wincowgerDEV/OpenSpecy documentation built on June 14, 2025, 5:57 a.m.