extrProtDC: Dipeptide Composition Descriptor
In wind22zhu/BioMedR: Generating Various Molecular Representations for Chemicals, Proteins, DNAs, RNAs and Their Interactions
Description
Usage
Arguments
Details
Value
Author(s)
References
See Also
Examples
Description
Dipeptide Composition Descriptor
Usage
1
extrProtDC(x)
Arguments
x
A character vector, as the input protein sequence.
Details
This function calculates the Dipeptide Composition descriptor (Dim: 400).
Value
A length 400 named vector
Author(s)
Min-feng Zhu <wind2zhu@163.com>,
Nan Xiao <http://r2s.name>
References
M. Bhasin, G. P. S. Raghava.
Classification of Nuclear Receptors Based on
Amino Acid Composition and Dipeptide Composition.
Journal of Biological Chemistry, 2004, 279, 23262.
See Also
See extrProtTC for tripeptide composition descriptors.
Examples
1
2
x = readFASTA(system.file('protseq/P00750.fasta', package = 'BioMedR'))[[1]]
extrProtDC(x)
wind22zhu/BioMedR documentation built on Oct. 21, 2019, 12:51 p.m.
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Description Usage Arguments Details Value Author(s) References See Also Examples
Description
Dipeptide Composition Descriptor
Usage
1 | extrProtDC(x)
|
Arguments
x |
A character vector, as the input protein sequence. |
Details
This function calculates the Dipeptide Composition descriptor (Dim: 400).
Value
A length 400 named vector
Author(s)
Min-feng Zhu <wind2zhu@163.com>, Nan Xiao <http://r2s.name>
References
M. Bhasin, G. P. S. Raghava. Classification of Nuclear Receptors Based on Amino Acid Composition and Dipeptide Composition. Journal of Biological Chemistry, 2004, 279, 23262.
See Also
See extrProtTC for tripeptide composition descriptors.
Examples
1 2 | x = readFASTA(system.file('protseq/P00750.fasta', package = 'BioMedR'))[[1]]
extrProtDC(x)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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