API for wjurkowski/ONION
ONION is a package implementing workflow for finding associations acrossomics data sets

Global functions
biopaxExporter Source code
checkIfPathwayIdExistsForChEBIId Source code
clusterUsingOntology Source code
createFunctionalInteractionsDataFrame Source code
firstExistsInReactomeChebiOntology Source code
frontPageItems Source code
getChEBIOntologyChildren Source code
getChEBIOntologyParents Source code
getDiseases Source code
getEnsemblIdsForPathway Source code
getEnsemblIdsForPathwayId Source code
getEnsemblIdsForPathwayIds Source code
getEnsemblProteinsIdsBaseOnEnsemblGensIdsUsingMyGenePackage Source code
getPathwaysIdsForChEBI Source code
getPathwaysIdsForChEBIAndOrganismCode Source code
getPathwaysIdsForChebiId Source code
getPathwaysIdsForChebiUnderOrganism Source code
getReferenceMolecules Source code
getStringNeighbours Source code
getSymbolsBaseOnEnsemblGensIdsUsingMyGenePackage Source code
getSymbolsBaseOnEnsemblPeptidIdsUsingMyGenePackage Source code
getSymbolsBaseOnUniProtIdsUsingMyGenePackage Source code
getUniProtIdsForPathwayId Source code
getUniProtIdsForPathwayIds Source code
getUniProtRefSeqs Source code
getUsablePathwaysIdsForChEBIForAllOrganisms Source code
highlightPathwayDiagram Source code
listByQuery Source code
makeCCAOnGroups Source code
makeCanonicalCorrelationAnalysis Source code
makePLSCharts Source code
makePLSOnGroups Source code
makePartialLeastSquaresRegression Source code
makePermutationTestOnCCA Source code
makePermutationTestOnPLS Source code
mapFromStringIdsToEnsembleIds Source code
mapReactomePathwaysUnderOrganism Source code
mergeChEBIOntologyWithChildFavoring Source code
onLoad Source code
pathwayComplexes Source code
pathwayDiagram Source code
pathwayHierarchy Source code
pathwayParticipants Source code
pathwaysForEntitie Source code
plotCanonicalCorrelationAnalysisResults Source code
plotRegression Source code
plotRmsepForPLS Source code
queryById Source code
queryByIds Source code
queryHitPathways Source code
queryPeopleByEmail Source code
queryPeopleByName Source code
queryReviewedPathways Source code
readGroupsAsDf Source code
removeDuplicates Source code
removeNA Source code
sbmlExporter Source code
speciesList Source code
stringResponseBodyToDataFrame Source code
wjurkowski/ONION documentation built on May 28, 2017, 4:37 a.m.