| gene_filter | Gene Filter |
| mad_filter | MAD Filter |
| normalPCA | Principal Component Analysis |
| onestepPCA | Principal Component Analysis |
| outlier_connectivity | Sample filter based on connectivity z-socres |
| outlier_hcluster | Sample filter based on hierarchical clustering |
| outlier_PCA | Sample filter based on PCA |
| pvca | Principal Variance Component Analysis |
| pvca2 | Principal Variance Component Analysis 2 |
| QC_boxplot | Box plot and bar plot |
| QC_density | Density plot |
| shinyDensity | Shiny density plot |
| shinyHcluster | Shiny hierarchical clustering |
| shinyHcluster2 | Shiny hierarchical clustering 2 |
| shinyPCA | Shiny PCA |
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