QC_boxplot: Box plot and bar plot

In wkl1990/MyPackage: The usually used code for data analysis in my pipeline.

Description

Box plot of log transformed data and bar plot of the mapping reads or total counts for quanlity control.

Usage

QC_boxplot(data, oneTrait = NULL, ylab = "log2(value+0.001)",
  main = "QC plot", mapping_reads = NULL, height = 5)

Arguments

data	Data matrix
oneTrait	One sample information which must be factor for box plot Defaults to NULL
ylab	The title used for the ylab of boxplot Defaults to log2(value+0.001)
main	The title for plot Defaults to QC plot
mapping_reads	The mapping reads which match the data for bar plot Defaults to NULL
height	The threshlod for bar plot Defaults to 5

Value

a boxplot of the data

Author(s)

WKL

Examples

QC_boxplot(data, trait$Race, mapping_reads=(runif(65,min=1000000,max=10000000)))

wkl1990/MyPackage documentation built on May 26, 2019, 6:36 a.m.