zonation: Run the program zonation from R

In wkmor1/rzonation: Run Zonation from R

Description

Run the zonation software for conservation planning on a set of files or raster objects and return the output as a list.

Usage

zonation(
  features,
  params = NULL,
  settings = NULL,
  dir = NULL,
  alpha = 0,
  dist_smooth = FALSE,
  kernel_width_mult = 1,
  command_args = NULL,
  additional_settings = NULL
)

## S4 method for signature 'RasterStack'
zonation(
  features,
  params = NULL,
  settings = NULL,
  dir = NULL,
  alpha = 0,
  dist_smooth = FALSE,
  kernel_width_mult = 1,
  command_args = NULL,
  additional_settings = NULL
)

## S4 method for signature 'RasterBrick'
zonation(
  features,
  params = NULL,
  settings = NULL,
  dir = NULL,
  alpha = 0,
  dist_smooth = FALSE,
  kernel_width_mult = 1,
  command_args = NULL,
  additional_settings = NULL
)

## S4 method for signature 'character'
zonation(
  features,
  params = NULL,
  settings = NULL,
  dir = NULL,
  alpha = 0,
  dist_smooth = FALSE,
  kernel_width_mult = 1,
  command_args = NULL,
  additional_settings = NULL
)

Arguments

features	RasterStack or file paths of the raster files for features in the conservation plan.
params	a matrix of feature parameter values. Matrix must have 5 columns and one row for each feature. If unset all values default to 1.See Zonation manual for details.
settings	a named list of settings equivalent to the zonation settings file (see zonation manual for details and list of settings)
dir	a directory to house tmp files.
alpha	numeric uncertainty parameter.
dist_smooth	logical. should distribution smoothing be used.
kernel_width_mult	numeric. factor to multiply feature dispersal kernel widths by.
command_args	character string of command line arguments. See zonation manual for details.
additional_settings	additional settings.

Functions

• zonation,RasterStack-method: run the program zonation for a RasterStack

• zonation,RasterBrick-method: run the program zonation for a RasterStack

• zonation,character-method: run the program zonation for raster files

Examples

library(raster)
r1 <- raster(matrix(runif(200^2, 0, 1), 200))
r2 <- raster(matrix(runif(200^2, 0, 1), 200))
plan <- zonation(stack(r1, r2))

wkmor1/rzonation documentation built on Jan. 18, 2020, 4:47 a.m.