file_out: Declare output files and directories. *[Stable]*

In wlandau-lilly/drake: A Pipeline Toolkit for Reproducible Computation at Scale

Declare output files and directories.

Description

file_out() marks individual files (and whole directories) that your targets create.

Usage

file_out(...)

Arguments

...	Character vector, paths to files and directories. Use .id_chr to refer to the current target by name. .id_chr is not limited to use in file_in() and file_out().

Value

A character vector of declared output file or directory paths.

Keywords

drake_plan() understands special keyword functions for your commands. With the exception of target(), each one is a proper function with its own help file.

• target(): give the target more than just a command. Using target(), you can apply a transformation (examples: ⁠https://books.ropensci.org/drake/plans.html#large-plans⁠), # nolint supply a trigger (⁠https://books.ropensci.org/drake/triggers.html⁠), # nolint or set any number of custom columns.

• file_in(): declare an input file dependency.

• file_out(): declare an output file to be produced when the target is built.

• knitr_in(): declare a knitr file dependency such as an R Markdown (⁠*.Rmd⁠) or R LaTeX (⁠*.Rnw⁠) file.

• ignore(): force drake to entirely ignore a piece of code: do not track it for changes and do not analyze it for dependencies.

• no_deps(): tell drake to not track the dependencies of a piece of code. drake still tracks the code itself for changes.

• id_chr(): Get the name of the current target.

• drake_envir(): get the environment where drake builds targets. Intended for advanced custom memory management.

See Also

file_in(), knitr_in(), ignore(), no_deps()

Examples

## Not run: 
isolate_example("contain side effects", {
# The `file_out()` and `file_in()` functions
# just takes in strings and returns them.
file_out("summaries.txt")
# Their main purpose is to orchestrate your custom files
# in your workflow plan data frame.
plan <- drake_plan(
  out = write.csv(mtcars, file_out("mtcars.csv")),
  contents = read.csv(file_in("mtcars.csv"))
)
plan
# drake knows "\"mtcars.csv\"" is the first target
# and a dependency of `contents`. See for yourself:

make(plan)
file.exists("mtcars.csv")

 # You may use `.id_chr` inside `file_out()` and `file_in()`
 # to refer  to the current target. This works inside `map()`,
 # `combine()`, `split()`, and `cross()`.

plan <- drake::drake_plan(
  data = target(
    write.csv(data, file_out(paste0(.id_chr, ".csv"))),
    transform = map(data = c(airquality, mtcars))
  )
)

plan

# You can also work with entire directories this way.
# However, in `file_out("your_directory")`, the directory
# becomes an entire unit. Thus, `file_in("your_directory")`
# is more appropriate for subsequent steps than
# `file_in("your_directory/file_inside.txt")`.
plan <- drake_plan(
  out = {
    dir.create(file_out("dir"))
    write.csv(mtcars, "dir/mtcars.csv")
  },
  contents = read.csv(file.path(file_in("dir"), "mtcars.csv"))
)
plan

make(plan)
file.exists("dir/mtcars.csv")

# See the connections that the file relationships create:
if (requireNamespace("visNetwork", quietly = TRUE)) {
  vis_drake_graph(plan)
}
})

## End(Not run)

wlandau-lilly/drake documentation built on Dec. 3, 2024, 11:09 p.m.