Man pages for wolski/mouseTissueCompare
Compare Mouse Tissues
| annotateSamples | annotate sample |
| createGraph | create an igraph |
| filterAndAggregate | filter ms exeperiment and aggreage peptides proteins |
| getDown | gets upper left quarter of a matrix |
| getDownUp | gets lower left quarter of a matrix |
| getUp | gets lower right quarter of a matrix |
| graphMeasures | computes graph measures degree, closeness, betweeness |
| keepSample | keep samples containing string |
| myqnormalize | quantile normalization |
| plotGraph | plot igraph facade |
| plotGraph2 | plot a graph - facade to igraphs plot function |
| plotGraphAnn | plot a graph - facade to igraphs plot function |
| plotGraphAnn2 | plot a graph - facade to igraphs plot function |
| plotGraphSimple | plot a graph - facade to igraphs plot function |
| plotHistCor2Cond | plots histograms from upper left, lower left, and lower right... |
| prefilterNewDataSet | load eperiment, aggregate peptides from top transitions etc. |
| rmNarows | remove rows with NAs from matrix |
| selectMatchStrains | Selects those columns with same strain information |
