Compare Mouse Tissues

annotateSamples | annotate sample |

createGraph | create an igraph |

filterAndAggregate | filter ms exeperiment and aggreage peptides proteins |

getDown | gets upper left quarter of a matrix |

getDownUp | gets lower left quarter of a matrix |

getUp | gets lower right quarter of a matrix |

graphMeasures | computes graph measures degree, closeness, betweeness |

keepSample | keep samples containing string |

myqnormalize | quantile normalization |

plotGraph | plot igraph facade |

plotGraph2 | plot a graph - facade to igraphs plot function |

plotGraphAnn | plot a graph - facade to igraphs plot function |

plotGraphAnn2 | plot a graph - facade to igraphs plot function |

plotGraphSimple | plot a graph - facade to igraphs plot function |

plotHistCor2Cond | plots histograms from upper left, lower left, and lower right... |

prefilterNewDataSet | load eperiment, aggregate peptides from top transitions etc. |

rmNarows | remove rows with NAs from matrix |

selectMatchStrains | Selects those columns with same strain information |

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