.Rbuildignore
          
        
          
            
            .gitignore
          
        
          
            
            DESCRIPTION
          
        
          
            
            NAMESPACE
          
        
          
            
            NOTES.md
          
        
          
            
            R/glm_fit.r
          
        
          
            
            R/glm_fit_test.r
          
        
          
            
            R/linmod-package.R
          
        
          
            
            R/lm_fit.r
          
        
          
            
            R/lm_fit_test.r
          
        
          
            
            R/utils.r
          
        
          
            
            README.md
          
        
          
            
            cleanup
          
        
          
            
            inst/RNACI/RNACI.h
          
        
          
            
            inst/benchmarks/lmfit.r
          
        
          
            
            inst/benchmarks/lmfit_fullrank.r
          
        
          
            
            inst/benchmarks/logistic.r
          
        
          
            
            inst/benchmarks/poisson.r
          
        
          
            
            inst/benchmarks/run
          
        
          
            
            man/glm_fit.Rd
          
        
          
            
            man/linmod-package.Rd
          
        
          
            
            man/lm_fit.Rd
          
        
          
            
            notes.txt
          
        
          
            
            redocument
          
        
          
            
            src/CMakeLists.txt
          
        
          
            
            src/Makefile
          
        
          
            
            src/cmake/Modules/FindR.cmake
          
        
          
            
            src/glm_fit.c
          
        
          
            
            src/glm_utils.c
          
        
          
            
            src/linmod.h
          
        
          
            
            src/linmod/BUGS
          
        
          
            
            src/linmod/CMakeLists.txt
          
        
          
            
            src/linmod/LICENSE
          
        
          
            
            src/linmod/Makefile
          
        
          
            
            src/linmod/TODO
          
        
          
            
            src/linmod/cleanup
          
        
          
            
            src/linmod/cmake/Modules/FindCheck.cmake
          
        
          
            
            src/linmod/cmake/Modules/FindCobra.cmake
          
        
          
            
            src/linmod/cmake/Modules/FindOpenMP_Fortran.cmake
          
        
          
            
            src/linmod/src/c_interface/glm_defines.h
          
        
          
            
            src/linmod/src/c_interface/lapack.h
          
        
          
            
            src/linmod/src/c_interface/linmod.h
          
        
          
            
            src/linmod/src/c_interface/lm_fit.c
          
        
          
            
            src/linmod/src/distributions/cauchy.c
          
        
          
            
            src/linmod/src/distributions/constants.h
          
        
          
            
            src/linmod/src/distributions/distributions.f90
          
        
          
            
            src/linmod/src/distributions/normal.c
          
        
          
            
            src/linmod/src/glm/glm.f90
          
        
          
            
            src/linmod/src/glm/glm_check.f90
          
        
          
            
            src/linmod/src/glm/glm_constants.f90
          
        
          
            
            src/linmod/src/glm/glm_family_utils.f90
          
        
          
            
            src/linmod/src/glm/glm_link_utils.f90
          
        
          
            
            src/linmod/src/glm/glm_loglik_utils.f90
          
        
          
            
            src/linmod/src/glm/glm_residuals_utils.f90
          
        
          
            
            src/linmod/src/glm/glm_update_utils.f90
          
        
          
            
            src/linmod/src/lapack/lapack.f90
          
        
          
            
            src/linmod/src/lapack/lapack_omp.f90
          
        
          
            
            src/linmod/src/lm/lm.f90
          
        
          
            
            src/linmod/src/lm/lm_types.f90
          
        
          
            
            src/linmod/src/lm/qr_utils.f90
          
        
          
            
            src/linmod/src/lm/rdgels.f90
          
        
          
            
            src/linmod/src/lm/rdgels_utils.f90
          
        
          
            
            src/linmod/src/lm/rdgeqp3.f90
          
        
          
            
            src/linmod/src/lm/rdlaqp2.f90
          
        
          
            
            src/linmod/src/lm/rdormqr.f90
          
        
          
            
            src/linmod/src/utils/Rspecial.c
          
        
          
            
            src/linmod/src/utils/Rspecial_.f90
          
        
          
            
            src/linmod/src/utils/include/README
          
        
          
            
            src/linmod/src/utils/include/insertionsort_by_index_generic.inc
          
        
          
            
            src/linmod/src/utils/include/insertionsort_generic.inc
          
        
          
            
            src/linmod/src/utils/include/quicksort_by_index_partition_generic.inc
          
        
          
            
            src/linmod/src/utils/include/quicksort_by_index_r_generic.inc
          
        
          
            
            src/linmod/src/utils/include/quicksort_median_of_3_generic.inc
          
        
          
            
            src/linmod/src/utils/include/quicksort_partition_generic.inc
          
        
          
            
            src/linmod/src/utils/include/quicksort_r_generic.inc
          
        
          
            
            src/linmod/src/utils/include/swap_generic.inc
          
        
          
            
            src/linmod/src/utils/include/swap_generic_indices.inc
          
        
          
            
            src/linmod/src/utils/insertionsorts.f90
          
        
          
            
            src/linmod/src/utils/linmod_omp.f90
          
        
          
            
            src/linmod/src/utils/quicksort_utils.f90
          
        
          
            
            src/linmod/src/utils/quicksorts.f90
          
        
          
            
            src/linmod/src/utils/string_tools.f90
          
        
          
            
            src/linmod/src/utils/swaps.f90
          
        
          
            
            src/linmod/src/utils/transposition.f90
          
        
          
            
            src/linmod/test/Makefile
          
        
          
            
            src/linmod/test/distributions.f90
          
        
          
            
            src/linmod/test/transpose.c
          
        
          
            
            src/linmod/test/transpose.f90
          
        
          
            
            src/lm_fit.c
          
        
          
            
            src/utils.c
          
        
          
            
            tests/glm_fit.r
          
        
          
            
            tests/lm_fit.r
          
        
          
            
            tests/lm_fit_suite.r