In wrightaprilm/Systematics2020: Systematics class spring 2022

knitr::opts_chunk$set(echo = TRUE)

We'll be doing something a little different for this week's homework. There will not be a question set to answer for this one. Download the files bears.nex and bears.cytb from here.

In the script we created in class ("partition_data_lab/mcmc_partition_morphology.Rev"), write a script in which:

• Morphology is modeled via the Mk model
• Molecules are modeled via GTR + G model
• Both data sources contribute to the tree
• An MCC tree is computed

Save the script on your RStudio. I will retrieve it from your RStudio after class April 5.

Run the script to convergence. When I go to check this, I will be checking:

• That the script runs
• The mcmc converges
• A tree file is there

wrightaprilm/Systematics2020 documentation built on April 30, 2022, 11:59 a.m.