Files in wu-lab-uva/RasperGade16S
Prediction of 16S rRNA GCN with RasperGade
.Rbuildignore
.gitignore
DESCRIPTION
NAMESPACE
R/RasperGade16S_EPA.R
R/RasperGade16S_analyses.R
R/RasperGade16S_data.R
R/RasperGade16S_jplace.R
R/RasperGade16S_partition.R
R/RasperGade16S_utils.R
R/RasperGade16S_wrapper.R
README.md
RasperGade16S.Rproj
data/RasperGade16S.GG.13.8.mask.keys.rda
data/RasperGade16S.SILVA.GCN.rda
data/RasperGade16S.refGCN.rda
data/RasperGade16S.refdata.rda
data/RasperGade16S.reftree.rda
inst/extdata/16S_core_gg.hmm
inst/extdata/Demo/demo.SILVA.fasta
inst/extdata/aligned_remove_dot.fasta
inst/extdata/reference.RAxML.model.txt
inst/extdata/reference.tre
inst/extdata/reference.trimmed.afa
man/RasperGade16S.GG.13.8.mask.keys.Rd
man/RasperGade16S.SILVA.GCN.Rd
man/RasperGade16S.refGCN.Rd
man/RasperGade16S.refdata.Rd
man/RasperGade16S.reftree.Rd
man/align_with_HMM_and_trim.Rd
man/check_partition.Rd
man/get_connected_nodes.Rd
man/get_partition_AIC.Rd
man/get_partition_transition.Rd
man/insert_query_with_EPA.Rd
man/parse_jplace.Rd
man/partition_phylogeny.Rd
man/predict_16SGCN_from_jplace.Rd
man/predict_16SGCN_from_sequences.Rd
man/refine_partition.Rd
man/relative_abundance.Rd
man/rescale_tree_by_partition_and_model.Rd
man/trim_sequence_with_mask.Rd
raspergade16s.yml
