RasperGade16S.refdata: Default full reference data for RasperGade16S
In wu-lab-uva/RasperGade16S: Prediction of 16S rRNA GCN with RasperGade
RasperGade16S.refdata R Documentation
Default full reference data for RasperGade16S
Description
A named list of 8 elements
Usage
RasperGade16S.refdata
Format
A named list with 8 elements:
- phy
scaled reference tree
- model
evolution model for GCN prediction
- epsilon
tip-specific epsilon term
- scale.branch
scaling factor for each branch, indexed by the descendant node
- epsilon.branch
branch-specific epsilon term
- dat
reference GCN
- original
unscaled reference tree
- FMR
marginal ancestral states for quick prediction of GCN
Source
wu-lab-uva/RasperGade16S documentation built on June 16, 2024, 11:21 a.m.
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| RasperGade16S.refdata | R Documentation |
Default full reference data for RasperGade16S
Description
A named list of 8 elements
Usage
RasperGade16S.refdata
Format
A named list with 8 elements:
- phy
scaled reference tree
- model
evolution model for GCN prediction
- epsilon
tip-specific epsilon term
- scale.branch
scaling factor for each branch, indexed by the descendant node
- epsilon.branch
branch-specific epsilon term
- dat
reference GCN
- original
unscaled reference tree
- FMR
marginal ancestral states for quick prediction of GCN
Source
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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