| category_delete | Delete a phenotype category |
| create_analysis_catalog | Create a new analysis catalog in the current project |
| create_category | Add a new category to this project. |
| create_phenotype | Create a new phenotype in the current project. |
| create_phenotype_matrix | Get a phenotype matrix object. |
| create_playlist | Create a new playlist in the current project. |
| get_access_token | Get an access token from a refresh token |
| get_analysis_catalog | Get an analysis catalog in the current project by name. |
| get_analysis_catalog_run | Get an analysis catalog run in the current project by name. |
| get_analysis_catalog_runs | A list of all the analysis catalog runs in the current... |
| get_analysis_catalogs | A list of all the analysis catalogs in the current project.... |
| get_categories | A list of all categories available in the system. |
| get_covariate | Get a single covariate by its id. |
| get_covariates | Get all covariates in current project. |
| get_data | Retrieve phenotype data or phenotype matrix data from the... |
| get_gorpipe | get_gorpipe |
| get_job | Get a workflow job |
| get_jobs | Get a list of jobs satisfying the supplied criteria |
| get_jwt_token_payload | Decode a JWT token and extract payload |
| get_phenotype | Get a specific phenotype in the current project. |
| get_phenotype_matrix | Get a phenotype matrix object. |
| get_phenotypes | A list of all/subset of phenotypes in the current project. |
| get_phenotypes_data | Retrieve phenotype data from the server. |
| get_phenotypes_dataframe | A dataframe of all/subset of phenotypes in the current... |
| get_pipelines | Returns the pipelines available on the current server |
| get_playlist | Get playlist in the current project based on the playlist's... |
| get_playlists | A list of all the playlists in the current project. |
| get_tags | Get all tags |
| gor_connect | Set up a connection object, and call the health endpoint to... |
| gor_create | gor_create |
| gor_define | GOR Define |
| gor_knitr_setup | GOR Knitr Setup |
| gor_query | Run a GOR query |
| gorr | GOR-R |
| gorr__cat | Custom wrapper for cli::cat..() |
| gorr__elapsed_time | Custom wrapper for formatted query progress messages |
| gorr__failure | Custom wrapper for stop() with formated error messages |
| gorr__get_query_results | Get server query results This is not a public function, but... |
| gorr__get_query_status | Get query status from api. This is not a public function, but... |
| gorr__get_response_body | Get response body, fail with an error if it has one |
| gorr__info | Custom wrapper for message() with formatted messages |
| gorr__kill_query | Kill remote query |
| gorr__post_query | Post query to api. This is not a public function, but is... |
| gorr__queryserver | Get query from queryserver api. This is not a public... |
| gorr__queryservice | Get query from queryservice api. This is not a public... |
| gorr__reconnect | Reconnect using a connection object from 'platform_connect' |
| gorr__warning | Custom wrapper for warning() with formatted error messages |
| phemat_add_phenotype | Add a new phenotype to the matrix request. |
| phemat_add_phenotypes | Add multiple phenotypes to a phenotype matrix request. |
| phemat_remove_phenotype | Remove a phenotype from the matrix request. |
| phenotype_add_tag | Add a new tag/s to this phenotype. |
| phenotype_add_tags | Add new tag/s phenotype. |
| phenotype_connect | Set up a connection object, and call the phenotype-catalog... |
| phenotype_delete | Delete a phenotype, including all data from a project |
| phenotype_delete_tag | Delete a tag/s from phenotype. |
| phenotype_delete_tags | Delete tag/s from phenotype. |
| phenotype_get_error | Retrieve latest error from phenotype query run |
| phenotype_get_errors | Retrieve all errors for phenotype query runs |
| phenotype_get_tags | Retrieve all tags for phenotype |
| phenotype_plot | Plot phenotype |
| phenotype_refresh | Refresh phenotype |
| phenotype_set_tags | Set the tag/s for this phenotype, overriding previous tags |
| phenotype_update | Update phenotype attributes |
| phenotype_update_description | Update the phenotype with a new description |
| phenotype_update_query | Update the phenotype with new query |
| phenotype_upload_data | Upload phenotype data |
| pipe | Pipe operator |
| platform_connect | Set up a connection object, and call the health endpoint to... |
| playlist_add_phenotype | Add phenotype to a playlist. |
| playlist_add_phenotypes | Add phenotype/s to playlist |
| playlist_delete | Delete a playlist from a project. |
| playlist_delete_phenotypes | Delete phenotype/s from playlist |
| playlist_refresh | Refresh playlist |
| playlist_update_description | Update playlist's description |
| playlist_update_phenotypes | Update playlist phenotypes |
| plot__category | Plot categorical phenotypes. This is not a public function,... |
| plot__qt | Plot quantitative phenotypes. This is not a public function,... |
| plot__set | Plot set phenotypes. This is not a public function, but is... |
| post_job | Run a workflow job |
| workflow_check_status | Get current status of job |
| workflow_inspect | Inspect a failed job for debugging. |
| workflow__is_running | Is the job currently running. This is not a public function |
| WorkflowJob | WorkflowJob class constructor |
| workflow_refresh | Refresh the local object of the serverside job object |
| workflow_wait | Wait for a running job to complete. |
