NEWS.md

In wvictor14/plmec: Placental DNA methylation analysis tools

planet 1.9.4

planet 1.9.3 (09-08-2023)

• add stop controls to predictEthnicity
• added some tests
• Bioconductor version bump

planet 1.9.2

• Bioconductor version bump

planet 1.9.1

• Bioconductor version bump

planet 0.99.4 (03-10-2021)

• Combined vignettes into a single one
• Updated references

planet 0.99.3 (01-22-2021)

• Update reference for cell composition
• Accepted into bioconductor, will be released in next cycle

planet 0.99.2 (01-07-2021)

• Vignettes updated with new function names
• Removed minfi from examples since installation fails on some R versions
• Moved .orig files to inst/script
• Moved data-raw/ contents to inst/script
• Moved man/figures/logo.png to inst/figures/logo.png, updated README
• Lazydata set to false

planet 0.99.0 (12-18-2020)

• Improved vignette figure quality
• Using github-actions check from biocthis
• Removed viridis from suggests
• Rewrote many data man pages

planet 0.3.0 (12-17-2020)

• Final preparations for Bioconductor submission
• Changed license to => GPL-2
• More detailed attribution to glmnet
• Renamed all functions to camel case convention, including functions, data, tests, documentation, vignettes
• Added planet-deprecated.R
• pl_infer_ethnicity() and pl_infer_age() now deprecated, replaced with predictEthnicity and predictAge, respectively.

planet 0.2.36 (12-17-2020)

• Removed minfi dependency
• Addressed all fixable >line80 and 4 space indent notes from BiocCheck
• Precompiling vignettes.

planet 0.2.35 (12-14-2020)

• added hexsticker
• updated zenodo doi
• added github actions
• added cells color palette
• favicons
• Fixed in-text citations in README

planet 0.2.34 (12-11-2020)

• Reduced nbeta from 4 mb to 30 kb
• Removed Matrix dependency from imports

planet 0.2.33 (12-11-2020)

• Fixed pl_infer_age() when missing CpGs
• Added tests for pl_infer_age() and pl_infer_ethnicity()
• Updated documentation

planet 0.2.32 (12-11-2020)

• Added vignettes
• Reduced README significantly
• Format documentation for Bioconductor style
• Added BiocViews to DESCRIPTION
• Wrap lines max 80 characters
• Create CITATION
• Add Wendy Robinson to authors

planet 0.2.3

• Fixes data export error on linux. See #6

planet 0.2.2

• Export nbeta, instead of keeping internal
• This fixes the install errors
• On linux, data objects are not properly exported. See #2

planet 0.2.1

• added syncytiotrophoblast reference cpgs

planet 0.2.0

• added pl_cell_cpgs_first and pl_cell_cpgs_third for cell composition inference

planet 0.1.1

• copied glmnet:::glment_softmax code to be compatible with new glmnet version

planet 0.1.0

• Added pl_infer_age to infer gestational age using Lee Y et al. placental DNAm clock.
• Modified example data to contain less probes and more samples, to save space but still be useful in the examples.

planet 0.0.1.9000

• Added a NEWS.md file to track changes to the package.

wvictor14/plmec documentation built on Feb. 26, 2024, 2:11 p.m.